| September 1999 | Hail | Prescott | 2 hurt, $18,000,000 | no account filed |
| August 2004 | Thunderstorm Wind | Prescott | 1 hurt | A micro burst pushed over a crane and it collapsed an under-construction riding arena. All the steal beams in-place for the arena fell down. The 67-year-old crane operator suffered head, back, and shoulder injuries. He was taken to a hospital for treatment. |
| September 2019 | Thunderstorm Wind | Prescott | $50,000 | A thunderstorm caused lots of wind damage (mostly downed tree branches) and 0.75 to 1.10 inches of rain in the Prescott and Dewey areas. |
| September 2003 | Lightning | Prescott | $10,000 | Lightning struck a radio station in Sedona and caused $10,000 damage to electrical equipment. |
| August 2003 | Lightning | Prescott | $10,000 | Lightning hit a radio station and caused $10,000 damage to electrical equipment. |
| August 2003 | Lightning | Prescott | $5,000 | Lightning hit an apartment building and started a fire. The fire caused $5,000 damage. Street flooding hampered firefighting efforts. |
| August 1998 | Tornado (F0) | Prescott | $4,000 | A house under construction was destroyed by an F0 tornado. A neighbour to the house under construction reported he saw a narrow, rotating cloud that extended from the ground to the base of a thunderstorm. This rotating cloud moved from about 300 yards away from the house under construction into the house under construction. The walls of the house were removed from the foundation and reduced to 2 x 4 inch stock and 4 by 8 feet sheets of plywood. This material was suspended in air about 30 seconds. |
| August 1997 | Thunderstorm Wind | Prescott | $2,000 | Strong thunderstorm winds knocked down several telephone poles. |
| July 2023 | Hail | Prescott | - | A spotter relayed a picture that showed a mixture of dime, nickel, and quarter sized hail. |
| July 2021 | Flash Flood | Prescott | - | The river gauge on Granite Creek rose 2.5 feet above base flow. |
| August 2020 | Flash Flood | Prescott | - | Heavy rain from a thunderstorm caused Granite Creek to rise 2.9 feet in an hour at the Granite Creek Gauge (GCRA3). |
| June 2015 | Heavy Rain | Prescott | - | A train spotter reported 2.50 inches of rain in just 45 minutes just west of Prescott Valley. Seven homes had minor flooding. |
| July 2014 | Heavy Rain | Prescott | - | The Coop observer in Prescott reported 1.63 inches in about 90 minutes. Local street flooding was also observed. |
| July 2006 | Hail | Prescott | - | Nickel sized hail was reported about 10 miles south of Prescott. |
| September 2006 | Heavy Rain | Prescott | - | Heavy rain fell over a large portion of Yavapai County from Prescott to Ash Fork. A spotter in Chino Valley reported about an inch of rain in just fifteen minutes with a total of over three inches of rain. Lowland flooding was observed near Paulden. Water was running over Highway 89 and was closed in several locations between mile posts 324 and 331. |
| September 2006 | Hail | Prescott | - | Penny to Nickel sized hail fell from Prescott to one mile west of Prescott. |
| September 2006 | Hail | Prescott | - | Penny sized hail was reported in Highland Pines...about 12 miles southwest of Prescott. |
| July 2006 | Funnel Cloud | Prescott | - | A funnel cloud was seen eight to ten miles south of Prescott. |
| August 2004 | Lightning | Prescott | - | Lightning knocked out power to 4,000 customers in the Prescott area. |
| September 2003 | Hail | Prescott | - | Pea to penny sized (1/4 to 3/4 inch diameter) hail was reported in Highland Pines west of Prescott. |
| September 2003 | Hail | Prescott | - | Dime sized (3/4 inch diameter) hail was reported in Prescott. |
| August 2003 | Hail | Prescott | - | 3/4 inch diameter hail was reported 10 miles northeast of Prescott. |
| August 2003 | Hail | Prescott | - | 3/4 inch diameter hail was reported in Prescott. |
| August 2003 | Flash Flood | Prescott | - | Creeks were flowing over Thumb Butte Road. |
| August 2003 | Flash Flood | Prescott | - | Vehicles were stranded on Cherry Road in Prescott due to water across the road. Yuma Drive was also flooded. |
| July 2003 | Thunderstorm Wind | Prescott | - | A thunderstorm in northeast Prescott produced a wind gust of 61 MPH. This storm also produced two inches of rain and pea sized hail. |
| July 2003 | Flash Flood | Prescott | - | Heavy rain caused flooding in the Prescott area. Several low water crossings were impassable. Willow Creek was flooding. A spotter in Chino Valley reported 0.60 inches of rain in just 15 minutes. |
| July 2002 | Hail | Prescott | - | One inch hail was reported in Prescott. |
| July 2001 | Hail | Prescott | - | Three-quarter inch hail covered the ground to one half inch deep in Prescott Valley. |
| June 2000 | Funnel Cloud | Prescott | - | A weather spotter in Prescott reported a funnel cloud 10 to 15 miles southwest of Prescott. |
| July 2000 | Hail | Prescott | - | A weather spotter reported 3/4 inch hail and heavy rain on the south end of Prescott. |
| July 2000 | Hail | Prescott | - | Yavapai County Sheriff reported one inch hail in Prescott. |
| July 2000 | Hail | Prescott | - | Public report of nickel sized hail. |
| July 2000 | Flash Flood | Prescott | - | Public report of street flooding in Prescott and Granite Creek nearly out of it's banks. |
| July 2000 | Hail | Prescott | - | Sheriff's office reported quarter sized hail. |
| September 1999 | Tornado (F0) | Prescott | - | Law enforcement officials reported a tornado touching down briefly west of the Prescott Country Club. |
| August 1998 | Lightning | Prescott | - | An isolated thunderstorm dropped heavy rain over downtown Prescott. Doppler radar estimates of 2 to 3 inches of rain fall in two hours caused widespread street flooding. Water rose just above curb level and seeped into a few downtown businesses. Lightning struck two homes, causing minor damage to one. |
| August 1998 | Hail | Prescott | - | A weather spooter reported 1.25 inch diameter hail. |
| August 1997 | Flash Flood | Prescott | - | Minor flooding at the Castle Canyon Mesa area in Prescott Valley. |
| May 1995 | Hail | Prescott | - | Several reports of hail up to three-quarters inches. A spotter reported hail up to one-half inch in diameter covering the ground. |
| May 1995 | Hail | Prescott | - | Several reports of hail up to three-quarters inches. A spotter reported hail up to one-half inch in diameter covering the ground. |
| September 1995 | Hail | Prescott | - | Dime-size hail covered the ground 1.5 inches deep and was accompanied by heavy rain. |
| June 1994 | Hail | Prescott | - | Large limbs were snapped off trees during a thunderstorm. |
| June 1994 | Hail | Prescott | - | Large limbs were snapped off trees during a thunderstorm. |
| August 1993 | Thunderstorm Wind | Prescott | - | Thunderstorms produced heavy rains and small hail. An observer in Prescott reported a peak gust of 68 mph. |
| May 2002 | Wildfire | Prescott | - | no account filed |
| July 2002 | Heavy Rain | Prescott | - | no account filed |
| July 2002 | Thunderstorm Wind | Prescott | - | no account filed |
| August 2001 | Heavy Rain | Prescott | - | no account filed |
| August 2001 | Hail | Prescott | - | no account filed |
| August 2001 | Hail | Prescott | - | no account filed |
| August 2001 | Thunderstorm Wind | Prescott | - | no account filed |
| August 2001 | Hail | Prescott | - | no account filed |
| September 1999 | Hail | Prescott | - | no account filed |
| September 1999 | Hail | Prescott | - | no account filed |
| September 1999 | Hail | Prescott | - | no account filed |
| September 1999 | Hail | Prescott | - | no account filed |
| September 1999 | Funnel Cloud | Prescott | - | no account filed |
| September 1999 | Hail | Prescott | - | no account filed |
| August 1998 | Flood | Prescott | - | no account filed |