| July 2013 | Tornado (EF2) | Mahnomen | $1,000,000 | This tornado continued into Clearwater County, where it lifted at about 0130 am CST, west-northwest of Zerkel. The tornado damaged structures at three locations along the route with long tracks of tree and crop damage evident. Peak winds were estimated at 115 mph. |
| May 1996 | Thunderstorm Wind | Mahnomen | $100,000 | no account filed |
| June 2002 | Thunderstorm Wind | Mahnomen | $50,000 | One airplane hanger was destroyed as well as the airplane inside. Another hanger was severely damaged. |
| July 1998 | Tornado (F0) | Mahnomen | $30,000 | A retired farmer was looking out his back door and saw a swirling cloud come down. He headed for the basement and was not hurt. His home lost power and his house and outbuildings were damaged. Witnesses said the tornado was a high-based rope tornado. |
| June 2002 | Thunderstorm Wind | Mahnomen | $10,000 | Windows were broken and a shed door was torn off. |
| August 2001 | Thunderstorm Wind | Mahnomen | $2,000 | Large trees were blown down. |
| May 1998 | Thunderstorm Wind | Mahnomen | $2,000 | A machine shed was blown down in the wind. |
| August 2001 | Thunderstorm Wind | Mahnomen | $1,000 | Trees and powerlines were blown down. |
| July 2001 | Thunderstorm Wind | Mahnomen | $500 | Tree branches were blown down. |
| July 1999 | Thunderstorm Wind | Mahnomen | $500 | Large tree limbs were blown down. |
| August 2025 | Thunderstorm Wind | Mahnomen | - | Wind gust measured by MN dot station MN044. |
| June 2023 | Hail | Mahnomen | - | Valley News Broadcaster reports quarter-sized hail in Mahnomen. |
| June 2022 | Thunderstorm Wind | Mahnomen | - | Peak wind was measured at the Minnesota DOT RWIS on Hwy 59. |
| May 2022 | Hail | Mahnomen | - | Received a report of dime to nickel sized hail. |
| October 2020 | Thunderstorm Wind | Mahnomen | - | Mahnomen Airport (K3N8) AWOS reported 51 knot or 58.7 mph wind gust. |
| May 2019 | Thunderstorm Wind | Mahnomen | - | The Mahnomen AWOS reported the wind gust, associated with a passing thunderstorm. A nearby MNDOT RWIS mesonet sensor also registered a peak wind of 73 mph. |
| June 2019 | Thunderstorm Wind | Mahnomen | - | A gustnado developed on two convergent thunderstorm outflow boundaries and slowly moved across a field. A persistent rotating dust plume was evident. |
| June 2017 | Thunderstorm Wind | Mahnomen | - | A couple of trees were split and broken down across power lines, resulting in local power outages. |
| July 2016 | Thunderstorm Wind | Mahnomen | - | Several large branches were blown down by the strong wind. |
| July 2016 | Thunderstorm Wind | Mahnomen | - | The wind gust was measured by a MNDOT RWIS sensor along highway 59. |
| July 2015 | Thunderstorm Wind | Mahnomen | - | Trees and power lines were blown down. |
| July 2015 | Thunderstorm Wind | Mahnomen | - | Several large trees were blown down. |
| June 2015 | Tornado (EF1) | Mahnomen | - | A tornado tracked across southern portions of the city of Mahnomen, where it ripped roofing off of a maintenance shed, lifted and tipped a parked semi trailer, slid parked vehicles, and destroyed a small wooden shed. Flying debris impacted and damaged additional vehicles and structures near the casino. Peak wind speeds were estimated at 95 mph. |
| September 2014 | Thunderstorm Wind | Mahnomen | - | Strong winds broke off a large piece of a tree in Mahnomen, where it fell into a street. |
| May 2011 | Thunderstorm Wind | Mahnomen | - | The wind gust was measured by an MNDOT RWIS sensor. |
| September 2008 | Funnel Cloud | Mahnomen | - | A brief cold core funnel was viewed south of Mahnomen. No touchdown was observed. |
| June 2008 | Thunderstorm Wind | Mahnomen | - | The wind gust was measured at the MNDOT RWIS site near Highway 59. |
| July 2007 | Thunderstorm Wind | Mahnomen | - | The wind gust was measured by a MNDOT RWIS sensor. |
| June 2007 | Thunderstorm Wind | Mahnomen | - | The wind gust was measured by a MNDOT RWIS wind sensor on U.S. Highway 59. |
| June 2006 | Hail | Mahnomen | - | The hail covered the ground. |
| August 2006 | Thunderstorm Wind | Mahnomen | - | The MNDOT RWIS site southeast of Mahnomen reported a 58 mph wind gust. A barn nearby was damaged. |
| September 2005 | Flash Flood | Mahnomen | - | Flash flooding occurred along Marsh Creek. Water briefly overtopped county road 130 near Marsh Creek. |
| June 2003 | Thunderstorm Wind | Mahnomen | - | Large branches were blown down and power outages were reported. |
| June 2002 | Flash Flood | Mahnomen | - | Highway 200 was flooded by water. Travel in Mahnomen county was not advised, as many other county roads were washed out. Many basements flooded and farm fields were submerged. |
| June 2002 | Flash Flood | Mahnomen | - | Citywide flooding was reported and no travel was advised throughout the county. |
| June 2002 | Thunderstorm Wind | Mahnomen | - | A MN DOT RWIS site measured a 67 mph wind gust. |
| August 2001 | Thunderstorm Wind | Mahnomen | - | A 63 mph wind gust was measured by a Minnesota DOT RWIS site. |
| August 2001 | Thunderstorm Wind | Mahnomen | - | A 60 mph wind gust was measured by a Minnesota DOT RWIS site. |
| June 1998 | Flash Flood | Mahnomen | - | Water was reported to be covering a portion of highway 200 near Mahnomen. |
| July 1998 | Tornado (F0) | Mahnomen | - | A tornado was picked up on video near the Shooting Star Casino in Mahnomen by a parking lot security camera. |
| May 1994 | Thunderstorm Wind | Mahnomen | - | Strong thunderstorm winds downed several large trees and power lines and tore shingles from many roofs of buildings in the Mahnomen area. |
| May 2022 | Hail | Mahnomen | - | no account filed |
| June 2018 | Hail | Mahnomen | - | no account filed |
| July 2010 | Thunderstorm Wind | Mahnomen | - | no account filed |
| July 2007 | Hail | Mahnomen | - | no account filed |
| July 2007 | Hail | Mahnomen | - | no account filed |
| August 2006 | Hail | Mahnomen | - | no account filed |
| July 2006 | Hail | Mahnomen | - | no account filed |
| September 2005 | Hail | Mahnomen | - | no account filed |
| June 2004 | Thunderstorm Wind | Mahnomen | - | no account filed |
| July 2004 | Hail | Mahnomen | - | no account filed |
| July 2004 | Thunderstorm Wind | Mahnomen | - | no account filed |
| July 2002 | Hail | Mahnomen | - | no account filed |
| August 2001 | Hail | Mahnomen | - | no account filed |
| June 2000 | Flash Flood | Mahnomen | - | no account filed |
| August 2000 | Hail | Mahnomen | - | no account filed |
| July 1999 | Hail | Mahnomen | - | no account filed |
| August 1997 | Hail | Mahnomen | - | no account filed |
| August 1997 | Hail | Mahnomen | - | no account filed |