| July 2013 | Flash Flood | Shakopee | $500,000 | Several local officials, trained spotters and the general public observed flash flooding across northern and eastern Scott County due to 3, to locally 8.3 inches of rain that fell between 4 AM CST to 9 AM CST. During the height of the storm, several low lying areas in Prior Lake, Savage, Shakopee, and Elko New Market became inundated with flood waters.||Specific flooded or impassable roads from local law enforcement officials during the height of the storm include; ||South Brunswick Avenue in Savage.|Vierling Drive East & Heather Street in Shakopee.|Flooded home on Harvest Lane in Shakopee.|Several feet of water over Valley View Road in Shakopee.|Twelve inches of flowing water on Dakotah Parkway, near Little Six Casino in the Shakopee Mdewakanton Sioux Community.|Northwood Road West and Spring Lake Road Southwest in Prior Lake.|Valley View near Independence Dr in Shakopee.|High water on Credit River Blvd near Natchez. |High water on Connelly Parkway and Connelly Place in Savage.|Home was flooded on Quentin Avenue South in Savage.|Water over the roadway on Xerxes and 260 Street East in New Market Township.|Water over the roadway on 160th Street Southeast and Fish Point Road Southeast in Prior Lake.|Around the Elko New Market area, Xerxes Avenue was impassable 2 miles south of County Road 2. |
| March 2010 | Flood | Shakopee | $400,000 | The Highway 101 bridge from Shakopee to Chanhassen was closed due to flood waters along the Minnesota River. Monetary costs were based on FEMA, State, and Local assistance which includes the following categories; emergency protective measures, road systems and bridges, utilities, and parks. |
| May 2022 | Thunderstorm Wind | Shakopee | $10,000 | A severe wind gust was measured at the local police office. In addition, the cover of an air handler located on the top of the Scott County Government Center blew off the building. A light pole also blew over at the corner of 4th Ave & Atwood Street in Shakopee. |
| August 2021 | Thunderstorm Wind | Shakopee | $1,000 | A few large trees were blown down in Shakopee, most of them rotted. The top wind speed recorded around Shakopee was 41 mph at the Jackson Township Mesonet site, located on Zumbro Ave., just south of Shakopee at about 1 PM CST. Another spotter recorded a wind gust of 52 mph at her home in Savage. |
| July 2025 | Thunderstorm Wind | Shakopee | - | Measured by Scott County mesonet in Shakopee. |
| July 2024 | Thunderstorm Wind | Shakopee | - | Measured from personal weather observing station. |
| September 2021 | Thunderstorm Wind | Shakopee | - | There was a downed tree and a bent light post in Shakopee, west of St. Francis Hospital. |
| August 2021 | Heavy Rain | Shakopee | - | A measured rainfall amount of 1.63 inches occurred with this storm. |
| August 2021 | Thunderstorm Wind | Shakopee | - | A 55 knot wind gust was measured by a local storm spotter in Shakopee by a handheld wind sensor. |
| July 2020 | Thunderstorm Wind | Shakopee | - | A tree fell onto a road in Shakopee. Minor damage was reported. |
| July 2019 | Thunderstorm Wind | Shakopee | - | A large tree was blown down in Shakopee. |
| July 2019 | Thunderstorm Wind | Shakopee | - | A light pole was blown down near Highway 101. |
| June 2017 | Thunderstorm Wind | Shakopee | - | There were 8 inch diameter tree limbs blown down. |
| August 2017 | Flash Flood | Shakopee | - | Several cars were stalled due to a flooded roadway at the intersection of Highway 101, and Marshall Road in Shakopee. |
| August 2016 | Heavy Rain | Shakopee | - | A measured rainfall report of 3.14 inches occurred east of Shakopee. |
| August 2016 | Heavy Rain | Shakopee | - | A measured rainfall report of 4.18 inches occurred southeast of Shakopee. |
| July 2015 | Thunderstorm Wind | Shakopee | - | A large tree was blown down in Shakopee. |
| June 2015 | Hail | Shakopee | - | Several reports of large hail occurred in the city of Shakopee. The largest hail stone was quarter size. |
| June 2014 | Heavy Rain | Shakopee | - | A local observer had a 12 hour rainfall report of 5.52 inches. |
| July 2014 | Hail | Shakopee | - | A trained spotter and some members of the general public observed a swath of large hail from Highway 169 in Shakopee near Valleyfair Amusement Park, eastward to near the Savage Community Park area. The largest hailstone was golf ball size. |
| July 2013 | Heavy Rain | Shakopee | - | A measured rainfall amount of 4.15 inches fell in less than 3 hours. |
| June 2013 | Heavy Rain | Shakopee | - | A measured rainfall total of 2.99 inches fell in a four hour period. |
| March 2010 | Flood | Shakopee | - | The Minnesota River flooded the parking lot at the Valley Fair Amusement Park near Shakopee. |
| June 2010 | Flash Flood | Shakopee | - | Several cars were stalled due to flood waters on County Road 83, and Valley View Road in Shakopee, Minnesota. |
| August 2009 | Heavy Rain | Shakopee | - | A trained spotter measured 4.62 inches of rainfall overnight. |
| August 2009 | Flash Flood | Shakopee | - | The local law enforcement officials in Shakopee, Minnesota reported several stalled cars due to high water and significant street flooding. |
| July 2008 | Thunderstorm Wind | Shakopee | - | One tree downed. |
| July 2006 | Thunderstorm Wind | Shakopee | - | Tree down across road at Highway 101 and Louis bridge. |
| June 2006 | Thunderstorm Wind | Shakopee | - | One and one half foot diameter tree down near Highway 101 and Minnesota River in northern Shakopee. |
| June 2005 | Thunderstorm Wind | Shakopee | - | Trees were downed. |
| June 2005 | Hail | Shakopee | - | Dime sized hail was reported at the intersection of Highway 78 and Highway 83. |
| September 2005 | Thunderstorm Wind | Shakopee | - | A few trees were downed across town, including one which fell onto a home along Spencer Street and one which fell onto a car and a home on Shakopee Avenue East. |
| May 2004 | Thunderstorm Wind | Shakopee | - | Large branches were downed. |
| August 2004 | Hail | Shakopee | - | Quarter sized hail fell at an amusement park. |
| July 2003 | Thunderstorm Wind | Shakopee | - | Few trees down, including some on power lines. |
| June 1999 | Thunderstorm Wind | Shakopee | - | Estimated windspeed. |
| June 1999 | Lightning | Shakopee | - | Lightning caused two house fires. |
| June 1999 | Hail | Shakopee | - | A few autos damaged. |
| June 1999 | Hail | Shakopee | - | Car windows smashed, car bodies dented. |
| May 1998 | Thunderstorm Wind | Shakopee | - | Semitrailer blown over. Car trapped under downed power lines. Estimated windspeed. |
| July 1998 | Thunderstorm Wind | Shakopee | - | Large branches and power lines down. Also reported in Savage. Estimated windspeed. |
| July 1997 | Thunderstorm Wind | Shakopee | - | Large trees blown down. Estimated windspeed. |
| July 1994 | Hail | Shakopee | - | Strong thunderstorm winds damaged several buildings near Jordan. |
| October 2023 | Hail | Shakopee | - | no account filed |
| October 2023 | Hail | Shakopee | - | no account filed |
| May 2022 | Hail | Shakopee | - | no account filed |
| May 2022 | Hail | Shakopee | - | no account filed |
| May 2022 | Thunderstorm Wind | Shakopee | - | no account filed |
| May 2018 | Thunderstorm Wind | Shakopee | - | no account filed |
| June 2017 | Hail | Shakopee | - | no account filed |
| August 2016 | Hail | Shakopee | - | no account filed |
| May 2012 | Hail | Shakopee | - | no account filed |
| June 2012 | Hail | Shakopee | - | no account filed |
| May 2011 | Hail | Shakopee | - | no account filed |
| May 2011 | Hail | Shakopee | - | no account filed |
| July 2008 | Hail | Shakopee | - | no account filed |
| August 2007 | Hail | Shakopee | - | no account filed |
| August 2007 | Hail | Shakopee | - | no account filed |
| June 2007 | Hail | Shakopee | - | no account filed |
| April 2004 | Hail | Shakopee | - | no account filed |