| August 2010 | Thunderstorm Wind | Lake City | $1,050,000 | Hundreds of trees and at least a half dozen power poles were blown down throughout the city of Lake City. Damage was also reported to several homes as well as to a 100,000 bushel grain bin and a dryer at a local business. The grain bin was destroyed. |
| April 2026 | Hail | Lake City | $820,000 | The public reported 2 inch diameter hail in Lake City. This resulted in damage to structures and vehicles in portions of the city. |
| September 2019 | Tornado (EF0) | Lake City | $250,000 | An EF0 tornado moved through Lake City. Along the path of the tornado, numerous trees were downed with some landing on houses and mobile homes. The roof of a building was blown off heavily damaging a bank. Some boats that were dry docked at a marina were blown over. |
| July 2008 | Hail | Lake City | $68,000 | Hail of 2.25 inches in diameter was observed. |
| May 1998 | Thunderstorm Wind | Lake City | $45,000 | no account filed |
| July 2000 | Hail | Lake City | $40,000 | no account filed |
| June 1998 | Thunderstorm Wind | Lake City | $35,000 | no account filed |
| June 2016 | Thunderstorm Wind | Lake City | $5,000 | Numerous trees and power lines were blown down near Lake City. |
| July 1999 | Thunderstorm Wind | Lake City | $5,000 | no account filed |
| August 2005 | Thunderstorm Wind | Lake City | $3,500 | no account filed |
| March 2019 | Flood | Lake City | $2,000 | Flooding occurred across parts of Wabasha County from the combination of rainfall and melting snow. A mudslide occurred on County Road 4 near the intersection with State Highway 60 north of Theilman. A road was closed because of flooding in the city of Wabasha and several accidents occurred as a result of debris on roadways. |
| September 2018 | Thunderstorm Wind | Lake City | $2,000 | Trees were blown down in Lake City. |
| July 2016 | Thunderstorm Wind | Lake City | $2,000 | Trees were blown down southeast of Lake City which partially blocked U.S. Highway 61. |
| June 2012 | Thunderstorm Wind | Lake City | $2,000 | Some trees were blown down in Lake City. |
| June 2007 | Hail | Lake City | $2,000 | no account filed |
| July 2002 | Flash Flood | Lake City | $1,500 | no account filed |
| June 2001 | Thunderstorm Wind | Lake City | $1,500 | no account filed |
| July 2001 | Thunderstorm Wind | Lake City | $1,500 | no account filed |
| June 2011 | Flash Flood | Lake City | $1,000 | Nearly three inches of rain fell in the previous 2 hours. This heavy rain caused a bank to erode along U.S. Highway 63. The erosion cause a couple of trees to fall down. |
| June 2011 | Flash Flood | Lake City | $1,000 | Bremers Creek was over the road where it crossed Marion Street southwest of Lake City. The water was still rising rapidly and some erosion of the road occurred. The Lake City Fire Department set up barricades to keep motorists from crossing the bridge until the amount of erosion could be determined. |
| August 2005 | Thunderstorm Wind | Lake City | $1,000 | no account filed |
| June 2001 | Hail | Lake City | $750 | no account filed |
| July 2010 | Thunderstorm Wind | Lake City | $200 | A cooperative observer estimated a 60 miles per hour wind gust with wooden picnic tables blown over in the city of Lake City. |
| April 2026 | Hail | Lake City | - | The public reported penny sized hail 2 miles southeast of Lake City. The report was relayed via mPING. |
| April 2026 | Hail | Lake City | - | The public reported quarter sized hail about 2 miles southeast of Lake City. The report was relayed via mPING. |
| April 2026 | Hail | Lake City | - | The public reported quarter sized hail in Lake City. The report was relayed via mPING. |
| July 2024 | Flood | Lake City | - | Significant rainfall throughout June pushed the Mississippi River at Lake City into flood stage in June and continued into July. The river stage crested in June and was falling throughout early July. |
| June 2024 | Flood | Lake City | - | Significant rainfall throughout June pushed the Mississippi River at Lake City into flood stage on June 27th. The river stage crested during the early evening on June 30th in minor flood stage at 17.26 ft. |
| April 2023 | Flood | Lake City | - | Significant upstream runoff from the combination of rainfall and rapidly melting snow pushed the Mississippi River at Lake City into flood stage on April 16th. A crest of 18.98 ft occurred on April 24th, 2.98 ft over flood stage. |
| May 2023 | Flood | Lake City | - | Significant upstream runoff from the combination of heavy rainfall and rapidly melting snow resulted in the sixth highest crest on record in Lake City towards the end of April. Subsequent dry conditions allowed the Mississippi River to slowly recede and drop below minor flood stage in Lake City on May 2nd. |
| May 2022 | Hail | Lake City | - | Half dollar sized hail was reported in Lake City. |
| May 2022 | Hail | Lake City | - | Up to half dollar sized hail was reported in Lake City. |
| March 2019 | Flood | Lake City | - | Runoff from rain and melting snow across the Upper Midwest produced high flows along the Mississippi River. Flooding began in Lake City on March 27th and continued into April. |
| April 2019 | Flood | Lake City | - | Flooding that began in late March along the Mississippi River in Lake City, continued into the middle of April. The river crested about a foot and a half above the flood stage at 17.63 feet on April 1st. |
| April 2019 | Flood | Lake City | - | A second round of runoff from rain and snowmelt caused renewed flooding to occur along the Mississippi River in Lake City. The river crested just under a foot above the flood stage at 16.88 feet on April 22nd. |
| June 2019 | Hail | Lake City | - | Quarter sized hail fell in Lake City. |
| June 2019 | Hail | Lake City | - | Quarter sized hail fell just west of Lake City. |
| June 2014 | Flood | Lake City | - | Runoff from heavy rains and inflow from tributary streams pushed the Mississippi River out of its banks in Lake City. The river crested around a half foot above the flood stage at 16.43 feet. The river remained above flood stage into July. |
| July 2014 | Flood | Lake City | - | Flooding that began in late June on the Mississippi River in Lake City ended when the river went below the flood stage on the second day of July. |
| June 2012 | Heavy Rain | Lake City | - | In a little more than an hour, almost three inches of rain fell in Lake City. Small streams in the area quickly became full or went slightly out of their banks. |
| April 2011 | Flood | Lake City | - | The combination of melting snow and rainfall in late March pushed the Mississippi River out of its banks at Lake City from the 8th through the 17th. The river crested just over a foot above the flood stage at 17.01 feet on the 14th. |
| June 2011 | Flood | Lake City | - | Locally heavy rain produced street flooding in Lake City. |
| June 2011 | Heavy Rain | Lake City | - | Three inches of rain was measured in the 2 hour period ending at 630 p.m. CST. |
| September 2010 | Heavy Rain | Lake City | - | Storm total rainfall was 6.45 inches, including 4.56 inches on September 23rd and a brand new daily September record. |
| July 2010 | Thunderstorm Wind | Lake City | - | The fire department measured a wind gust of 65 miles per hour in the city of Lake City. |
| July 2008 | Hail | Lake City | - | A trained spotter estimated 1 inch diameter hail and 30 mph wind gusts. |
| May 2017 | Hail | Lake City | - | no account filed |
| August 2017 | Hail | Lake City | - | no account filed |
| July 2008 | Hail | Lake City | - | no account filed |
| July 2008 | Hail | Lake City | - | no account filed |
| March 2005 | Hail | Lake City | - | no account filed |
| March 2005 | Thunderstorm Wind | Lake City | - | no account filed |
| June 2003 | Funnel Cloud | Lake City | - | no account filed |
| May 2002 | Hail | Lake City | - | no account filed |
| June 2002 | Hail | Lake City | - | no account filed |
| June 2001 | Hail | Lake City | - | no account filed |
| June 2001 | Thunderstorm Wind | Lake City | - | no account filed |
| June 2001 | Hail | Lake City | - | no account filed |
| March 1998 | Hail | Lake City | - | no account filed |