| September 2009 | Flash Flood | North Jefferson | $250,000 | Several local business in town experienced flood damage from the excessive heavy rainfall that fell during the day. Several city streets were closed as well. The Bakery Restaurant along with the Jefferson Jimplecute and numerous other buildings in town suffered water damage when city pumps couldn't handle the excessive heavy rainfall. The worst flooding occurred along Austin, Polk, Walnut and Soda Streets but there was some water damage to Parker and Parker CPAs and the Otstott and Jaminson law firms on Lafayette Street. |
| December 2012 | Thunderstorm Wind | Jefferson | $100,000 | The roof was taken off a home by strong winds in Jefferson, Texas. There were no reports of injuries. |
| May 2008 | Flash Flood | North Jefferson | $100,000 | Excessive heavy rainfall resulted in numerous road closures throughout the town. Very high water with stalled vehicles were reported at Henderson Street and Canal Street. |
| May 1993 | Hail | Jefferson | $50,000 | Hail damage to cars. |
| June 2008 | Thunderstorm Wind | Jefferson | $30,000 | A tree was downed along Highway 49 and on Pine Hill Drive in Jefferson, Texas. The Rusty Rail Golf Club suffered roof damage to the clubhouse as well as some damage from fallen trees to the golf course. |
| April 2015 | Thunderstorm Wind | Jefferson | $25,000 | A tree was downed on a home resulting in minor to moderate damage in Jefferson, Texas. |
| August 1994 | Thunderstorm Wind | Jefferson | $5,000 | Trees were blown down by thunderstorm winds. |
| October 1994 | Thunderstorm Wind | Jefferson | $5,000 | Trees were blown down. |
| November 1994 | Thunderstorm Wind | Jefferson | $5,000 | Trees were blown down by high winds. |
| November 1994 | Thunderstorm Wind | Jefferson | $5,000 | Trees blown down by high winds blocked Highway 47 east of Jefferson. |
| April 1994 | Thunderstorm Wind | Jefferson | $5,000 | Numerous trees were blown down 5 S Jefferson. |
| August 1993 | Thunderstorm Wind | Jefferson | $5,000 | Numerous trees were blown down by thunderstorm winds. |
| January 1993 | Thunderstorm Wind | Jefferson | $5,000 | Trees and power lines were downed on highway 47. |
| April 2025 | Hail | North Jefferson | - | Nickel size hail fell just west of Jefferson. |
| March 2024 | Flash Flood | North Jefferson | - | Highway 49 from the northeast side of Jefferson to County Road 248 was flooded and closed. |
| June 2024 | Thunderstorm Wind | Jefferson | - | A few buildings in Jefferson sustained roof removal due to high winds. |
| April 2024 | Thunderstorm Wind | Jefferson | - | Numerous trees and power lines downed in Jefferson. |
| March 2023 | Thunderstorm Wind | Jefferson | - | Numerous trees downed across parts of Marion County. |
| June 2023 | Thunderstorm Wind | Jefferson | - | Widespread reports of trees and power lines downed throughout Marion County. |
| July 2022 | Thunderstorm Wind | Jefferson | - | Numerous trees, power lines, and power poles downed across the city of Jefferson. |
| July 2022 | Thunderstorm Wind | Jefferson | - | A large tree fell onto a boat house and boats along Big Cypress Bayou at the Turning Basin Riverboat Tours facility on the southeast side of Jefferson. |
| December 2021 | Thunderstorm Wind | North Jefferson | - | A power line was blown down onto a tree causing the tree to catch on fire. |
| July 2020 | Thunderstorm Wind | North Jefferson | - | A tree was blown down onto power lines on Highway 49 near FM 728 west of Jefferson. Another tree was blown down on FM 729 west of Jefferson. |
| June 2019 | Thunderstorm Wind | Jefferson | - | A tree was downed at 411 South Friou Street in Jefferson. |
| June 2019 | Thunderstorm Wind | North Jefferson | - | A tree was blown over and hung about 4-5 feet along Highway 49 West near the Jefferson city limits. |
| April 2018 | Thunderstorm Wind | Jefferson | - | Several trees and power lines were downed across Jefferson. Other downed trees and power lines were reported across much of Marion County as well. |
| April 2018 | Thunderstorm Wind | Jefferson | - | Several trees were blown down near and along FM 134 just south of Jefferson. |
| July 2018 | Thunderstorm Wind | Jefferson | - | Trees were downed along County Road 2208. |
| December 2018 | Thunderstorm Wind | North Jefferson | - | Numerous trees were blown down across much of Marion County. |
| March 2016 | Thunderstorm Wind | Jefferson | - | Power line down across Highway 59 just south of the Jefferson city limits. |
| May 2015 | Thunderstorm Wind | North Jefferson | - | Numerous large limbs were downed northwest of Jefferson. |
| October 2014 | Thunderstorm Wind | Jefferson | - | Numerous trees and powerlines were downed in Jefferson, Texas. |
| July 2014 | Thunderstorm Wind | Jefferson | - | Trees were downed in Jefferson, Texas. |
| October 2014 | Thunderstorm Wind | Jefferson | - | A tree was downed just east of Jefferson near FM. 248 and Hall Road. |
| July 2013 | Thunderstorm Wind | Jefferson | - | Numerous trees and powerlines were downed throughout the county. |
| January 2013 | Thunderstorm Wind | Jefferson | - | Several trees were downed throughout the county. |
| November 2012 | Thunderstorm Wind | Jefferson | - | Powerlines were downed in Jefferson, Texas. |
| June 2012 | Thunderstorm Wind | Jefferson | - | Trees were downed on Shady Grove Road in Jefferson, Texas. |
| June 2010 | Thunderstorm Wind | North Jefferson | - | Large limbs were downed on Hwy. 49 west of Jefferson, Texas. |
| June 2008 | Thunderstorm Wind | North Jefferson | - | Trees were downed along Hwy 59 north of Jefferson, Texas. |
| May 2007 | Thunderstorm Wind | Jefferson | - | Trees and powerlines downed. |
| June 2006 | Thunderstorm Wind | Jefferson | - | Several trees were blown down...mainly over the eastern portions of the county. |
| June 2004 | Thunderstorm Wind | Jefferson | - | Trees and power lines downed throughout the entire county. |
| June 2004 | Thunderstorm Wind | Jefferson | - | Trees and power lines downed throughout the county. |
| May 2004 | Thunderstorm Wind | Jefferson | - | Several trees downed. |
| May 2004 | Thunderstorm Wind | Jefferson | - | Several trees downed. |
| August 2003 | Thunderstorm Wind | Jefferson | - | Several large trees and power lines down in downtown. |
| May 2003 | Thunderstorm Wind | Jefferson | - | Several large trees down. |
| May 2003 | Hail | Jefferson | - | Baseball sized hail shattered windows in vehicles. |
| March 2001 | Thunderstorm Wind | Jefferson | - | Several large trees toppled near Lake O The Pines. |
| May 2001 | Thunderstorm Wind | Jefferson | - | Numerous trees down. |
| June 2001 | Thunderstorm Wind | Jefferson | - | Several large trees down. |
| May 1999 | Thunderstorm Wind | Jefferson | - | Trees down along Hwy 49. |
| April 1999 | Thunderstorm Wind | Jefferson | - | Several large trees down. |
| January 1998 | Hail | Jefferson | - | Located on FM 2208 in Jefferson. |
| August 1998 | Thunderstorm Wind | Jefferson | - | Several trees down. |
| May 1998 | Thunderstorm Wind | Jefferson | - | Several trees toppled at the Hwy 43 Hwy 49 junction. |
| February 1998 | Tornado (F1) | Jefferson | - | HP Supercell and associated tornado developed along a northeast-southwest orientated cold front and moved slowly east-northeast across Harrison and Marion counties, Texas. The tornado track extended for 16 miles across two counties, however, the damage path was confined to a wooded region away from any population and structures. Damage consisted of small trees and large limbs broken or snapped . |
| February 1998 | Thunderstorm Wind | Jefferson | - | Trees and powerlines were toppled along FM 726 and TX 49. |
| June 1997 | Thunderstorm Wind | Jefferson | - | Several large trees were blown down across Hwy 729. |